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1

Chemical Composition of DNA-Encoded Libraries, Past Present and Future

Dickson, Paige, Kodadek, Thomas

Journal:

Organic & Biomolecular Chemistry

Year:

2019

Language:

english

File:

PDF, 2.06 MB

english, 2019

2

From carpet bombing to cruise missiles: the ‘second-order’ mechanisms used by transcription factors to ensure specific DNA binding in vivo

Journal:

Chemistry & Biology

Year:

1995

Language:

english

File:

PDF, 1.91 MB

english, 1995

3

Using Oxidative Crosslinking and Proximity Labeling to Quantitatively Characterize Protein-Protein and Protein-Peptide Complexes

Frank Amini, Carilee Denison, Hai-Jui Lin, Lillian Kuo, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2003

Language:

english

File:

PDF, 654 KB

english, 2003

4

Synthesis and characterization of diaryl sapphyrins prepared under Lindsey-type conditions

Sessler, Jonathan L., Lisowski, Jerzy, Boudreaux, Kevin A., Lynch, Vincent, Barry, John, Kodadek, Thomas J.

Journal:

Journal of Organic Chemistry

Year:

1995

Language:

english

File:

PDF, 426 KB

english, 1995

5

A Reversible and Highly Selective Inhibitor of the Proteasomal Ubiquitin Receptor Rpn13 Is Toxic to Multiple Myeloma Cells

Trader, Darci J., Simanski, Scott, Kodadek, Thomas

Journal:

Journal of the American Chemical Society

Year:

2015

Language:

english

File:

PDF, 3.69 MB

english, 2015

6

The Activation Domain of GAL4 Protein Mediates Cooperative Promoter Binding with General Transcription Factors in vivo

Sanjay Vashee and Thomas Kodadek

Journal:

Proceedings of the National Academy of Sciences

Year:

1995

Language:

english

File:

PDF, 1.20 MB

english, 1995

7

Screening one bead one compound libraries against serum using a flow cytometer: Determination of the minimum antibody concentration required for ligand discovery

Erharuyi, Osayemwenre, Simanski, Scott, McEnaney, Patrick J., Kodadek, Thomas

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2018

Language:

english

File:

PDF, 1.77 MB

english, 2018

8

Solid-Phase Synthesis of DNA-Encoded Libraries Via An âAldehyde Explosionâ Strategy

Paciaroni, Nicholas G., Ndungu, John Maina, Kodadek, Thomas

Journal:

Chemical Communications

Year:

2020

Language:

english

File:

PDF, 1.32 MB

english, 2020

9

Protein Affinity Labeling Mediated by Genetically Encoded Peptide Tags

Frank Amini, Thomas Kodadek, Kathlynn C. Brown

Journal:

Angewandte Chemie

Year:

2002

Language:

english

File:

PDF, 142 KB

english, 2002

10

Protein Affinity Labeling Mediated by Genetically Encoded Peptide Tags

Frank Amini, Thomas Kodadek, Kathlynn C. Brown

Journal:

Angewandte Chemie International Edition

Year:

2002

Language:

english

File:

PDF, 143 KB

english, 2002

11

A Cell-Permeable Synthetic Transcription Factor Mimic

Xiangshu Xiao, Peng Yu, Hyun-Suk Lim, Devanjan Sikder, Thomas Kodadek

Journal:

Angewandte Chemie

Year:

2007

Language:

english

File:

PDF, 186 KB

english, 2007

12

A Cell-Permeable Synthetic Transcription Factor Mimic

Xiangshu Xiao, Peng Yu, Hyun-Suk Lim, Devanjan Sikder, Thomas Kodadek

Journal:

Angewandte Chemie International Edition

Year:

2007

Language:

english

File:

PDF, 186 KB

english, 2007

13

Inhibition of proteolysis and other posttranslational modifications with substrate-targeted inhibitors

Journal:

Year:

2002

Language:

english

File:

PDF, 1.17 MB

english, 2002

14

Quantum Dots As A Visual Aid For Screening Bead-Bound Combinatorial Libraries

Hernando J. Olivos, Kiran Bachhawat-Sikder, Thomas Kodadek

Journal:

Year:

2003

Language:

english

File:

PDF, 132 KB

english, 2003

15

Synthetic Molecules as Antibody Replacements

Thomas Kodadek, M. Muralidhar Reddy, Hernando J. Olivos, Kiran Bachhawat-Sikder, Prasanna G. Alluri

Journal:

Year:

2004

File:

PDF, 7 KB

2004

16

ChemInform Abstract: The Rise, Fall and Reinvention of Combinatorial Chemistry

Journal:

Year:

2011

File:

PDF, 18 KB

2011

17

The detection limit of a Gd3+-based T1 agent is substantially reduced when targeted to a protein microdomain

Kenjiro Hanaoka, Angelo Josue M. Lubag, Aminta Castillo-Muzquiz, Thomas Kodadek, A. Dean Sherry

Journal:

Magnetic Resonance Imaging

Year:

2008

Language:

english

File:

PDF, 701 KB

english, 2008

18

The dangers of ‘splicing and dicing’: on the use of chimeric transcriptional activators in vitro

Thomas Kodadek, Stephen A. Johnston

Journal:

Chemistry & Biology

Year:

1995

Language:

english

File:

PDF, 4.61 MB

english, 1995

19

High-throughput evaluation of relative cell permeability between peptoids and peptides

Niclas C. Tan, Peng Yu, Yong-Uk Kwon, Thomas Kodadek

Journal:

Bioorganic & Medicinal Chemistry

Year:

2008

Language:

english

File:

PDF, 828 KB

english, 2008

20

A peptoid antagonist of VEGF Receptor 2 recognizes a ‘hotspot’ in the extracellular domain distinct from the hormone-binding site

D. Gomika Udugamasooriya, Caroline Ritchie, Rolf A. Brekken, Thomas Kodadek

Journal:

Bioorganic & Medicinal Chemistry

Year:

2008

Language:

english

File:

PDF, 841 KB

english, 2008

21

The pharmacophore of a peptoid VEGF receptor 2 antagonist includes both side chain and main chain residues

D. Gomika Udugamasooriya, Geoff Dunham, Caroline Ritchie, Rolf A. Brekken, Thomas Kodadek

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2008

Language:

english

File:

PDF, 197 KB

english, 2008

22

Rapid identification of improved protein ligands using peptoid microarrays

Hyun-Suk Lim, M. Muralidhar Reddy, Xiangshu Xiao, Johnnie Wilson, Rosemary Wilson, Steven Connell, Thomas Kodadek

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2009

Language:

english

File:

PDF, 581 KB

english, 2009

23

Genomic studies of transcription factor–DNA interactions

Devanjan Sikder, Thomas Kodadek

Journal:

Current Opinion in Chemical Biology

Year:

2005

Language:

english

File:

PDF, 761 KB

english, 2005

24

Proteomics and genomics: A chemo-centric view of proteomics and genomics

Benjamin F Cravatt, Thomas Kodadek

Journal:

Current Opinion in Chemical Biology

Year:

2005

Language:

english

File:

PDF, 65 KB

english, 2005

25

Development of antibody surrogates for the treatment of cancers and autoimmune disease

Journal:

Current Opinion in Chemical Biology

Year:

2010

Language:

english

File:

PDF, 498 KB

english, 2010

26

Synthetic receptors with antibody-like binding affinities

Journal:

Current Opinion in Chemical Biology

Year:

2010

Language:

english

File:

PDF, 455 KB

english, 2010

27

Transcription Activation by a PNA-Peptide Chimera in a Mammalian Cell Extract

Bo Liu, Ying Han, Anwarul Ferdous, David R Corey, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2003

Language:

english

File:

PDF, 490 KB

english, 2003

28

Target Identification in Chemical Genetics: The (Often) Missing Link

Lyle Burdine, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2004

Language:

english

File:

PDF, 149 KB

english, 2004

29

Transformation of Low-Affinity Lead Compounds into High-Affinity Protein Capture Agents

M.Muralidhar Reddy, Kiran Bachhawat-Sikder, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2004

Language:

english

File:

PDF, 554 KB

english, 2004

30

Quantitative Comparison of the Relative Cell Permeability of Cyclic and Linear Peptides

Yong-Uk Kwon, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2007

Language:

english

File:

PDF, 542 KB

english, 2007

31

Isolation of Antagonists of Antigen-Specific Autoimmune T Cell Proliferation

Anne R. Gocke, D. Gomika Udugamasooriya, Chase T. Archer, Jiyong Lee, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2009

Language:

english

File:

PDF, 594 KB

english, 2009

32

Seamless Bead to Microarray Screening: Rapid Identification of the Highest Affinity Protein Ligands from Large Combinatorial Libraries

John M. Astle, Levi S. Simpson, Yong Huang, M. Muralidhar Reddy, Rosemary Wilson, Steven Connell, Johnnie Wilson, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2010

Language:

english

File:

PDF, 837 KB

english, 2010

33

Site-directed oxidative protein crosslinking

David A. Fancy, Thomas Kodadek

Journal:

Year:

1997

Language:

english

File:

PDF, 496 KB

english, 1997

34

Asymmetric Cyclopropanation of alkenes catalyzed by a “chiral wall” prophyrin

Sean O'Malley, Thomas Kodadek

Journal:

Tetrahedron Letters

Year:

1991

Language:

english

File:

PDF, 238 KB

english, 1991

35

A new “5+1” route to arenes. Application to the facile synthesis of D4-symmetric chiral porphyrins

John Barry, Thomas Kodadek

Journal:

Tetrahedron Letters

Year:

1994

Language:

english

File:

PDF, 225 KB

english, 1994

36

Catalysis of Diels-Alder reactions by metalloporphyrins

David W. Bartley, Thomas J. Kodadek

Journal:

Tetrahedron Letters

Year:

1990

Language:

english

File:

PDF, 191 KB

english, 1990

37

Scope, limitations and mechanistic aspects of the photo-induced cross-linking of proteins by water-soluble metal complexes

David A Fancy, Carilee Denison, Kyonghee Kim, Yueqing Xie, Terra Holdeman, Frank Amini, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2000

Language:

english

File:

PDF, 963 KB

english, 2000

38

Chemistry & Biology: a challenging balancing act

Journal:

Chemistry & Biology

Year:

2000

Language:

english

File:

PDF, 38 KB

english, 2000

39

Protein microarrays: prospects and problems

Journal:

Chemistry & Biology

Year:

2001

Language:

english

File:

PDF, 918 KB

english, 2001

40

An inhibitor of sequence-specific proteolysis that targets the substrate rather than the enzyme

Zhiwen Zhang, Thi Ly, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2001

Language:

english

File:

PDF, 345 KB

english, 2001

41

Immobilized Peptides as High-Affinity Capture Agents for Self-Associating Proteins

Jacqueline L Naffin, Ying Han, Hernando J Olivos, M.Muralidhar Reddy, Tingwan Sun, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

2003

Language:

english

File:

PDF, 285 KB

english, 2003

42

Small-molecule-based strategies for controlling gene expression

Carilee Denison, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

1998

Language:

english

File:

PDF, 6.68 MB

english, 1998

43

Interaction, assembly and processing

Roger Brent, Thomas Kodadek

Journal:

Current Opinion in Chemical Biology

Year:

2000

Language:

english

File:

PDF, 58 KB

english, 2000

44

Enantioselective catalysis of epoxidation by metalloporphyrins: application to enantioselective synthesis

Lara A. Campbell, Thomas Kodadek

Journal:

Journal of Molecular Catalysis A: Chemical

Year:

1996

Language:

english

File:

PDF, 1.61 MB

english, 1996

45

A VEGFR2 Antagonist and Other Peptoids Evade Immune Recognition

John M. Astle, D. Gomika Udugamasooriya, Joan E. Smallshaw, Thomas Kodadek

Journal:

International Journal of Peptide Research and Therapeutics

Year:

2008

Language:

english

File:

PDF, 345 KB

english, 2008

46

Synthesis and catalytic epoxidation activity of terpene-derived D4-symmetric metalloporphyrins

John F. Barry, Lara Campbell, Dudley W. Smith, Thomas Kodadek

Journal:

Year:

1997

Language:

english

File:

PDF, 1.20 MB

english, 1997

47

Protein cross-linking mediated by metalloporphyrins

Lara A. Campbell, Thomas Kodadek, Kathlynn C. Brown

Journal:

Bioorganic & Medicinal Chemistry

Year:

1998

Language:

english

File:

PDF, 436 KB

english, 1998

48

New chemistry for the study of multiprotein complexes: the six-histidine tag as a receptor for a protein crosslinking reagent

David A. Fancy, Karsten Melcher, Stephen Albert Johnston, Thomas Kodadek

Journal:

Chemistry & Biology

Year:

1996

Language:

english

File:

PDF, 2.34 MB

english, 1996

49

Stimulation of protein-directed strand exchange by a DNA helicase

Kodadek, Thomas, Alberts, Bruce M.

Journal:

Year:

1987

File:

PDF, 385 KB

1987

50

Biochemistry: Molecular cloaking devices

Kodadek, Thomas

Journal:

Year:

2008

Language:

english

File:

PDF, 843 KB

english, 2008

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